This nutritious whole wheat bread recipe pays off with its delicately fluffy crumb and perfectly crispy-crunchy seeded crust. And it’s surprisingly easy to make!

An overhead photo of baked whole wheat bread in a loaf pan.
Photo Credits: Mark Beahm

This wholesome and flavorful seeded whole wheat bread recipe is one of the many loaves I baked over the two years when I returned to New England after living in Spain. One of my first “culture shocks” was the supermarket sandwich loaves. They were so sweet, the crumb soft but disappointing, as was the crust. It took a long time to find store-bought artisan bread, and when I did they were surprisingly expensive.

Whenever I could manage, I’d make homemade bread. Dedicating ten minutes of meditative mixing and kneading, plus passive time waiting for the dough to rise and bake, turned into a delicious ritual. This simple whole wheat bread recipe was born, along with other whole wheat goodies like Pizzas Dough and Blueberry Muffins.

With this simple loaf, the whole wheat flour imparts a complex and earthy flavor, while the blend of toasted seeds adds a mild nuttiness. As opposed to supermarket varieties, homemade bread has a crisp crust to contrast the soft interior. The crunchy seeds add to the textural variety, and you can control the sweetness with just a tablespoon of honey.

Making your own sandwich bread doesn’t require as much time as you might expect, especially when you consider it’s mostly hands-off. Storebought bread doesn’t get stale as quickly as homemade bread–almost frighteningly so—but you will get a few days out of this one. Plus, it comes back to life with a quick trip to the toaster, ready for Breakfast Toasts or open-faced sandwiches.

Table of Contents
  1. Seeded Whole Wheat Bread Ingredients and Substitutions 
  2. How to Make Seeded Whole Wheat Bread
    1. Make and Rest the Dough
    2. Shape, Top, and Proof the Dough
    3. Bake, Cool, and Slice
  3. What Seeds to Use for Whole Wheat Bread
  4. How to Knead Whole Wheat Dough
    1. To knead by hand:
    2. To knead in a stand mixer:
  5. What to Serve with Seeded Whole Wheat Bread
  6. More Whole Wheat Treats
  7. Seeded Whole Wheat Bread Recipe
Ingredients for whole wheat bread including flax, sunflower and sesame seeds, whole wheat flour, all purpose flour, salt, instant yeast, water, olive oil and honey.

Seeded Whole Wheat Bread Ingredients and Substitutions 

This simple list of ingredients bakes into a nutty, wholesome sandwich bread, and it can easily be made vegan. This bread is a great way to use up partial bags of seeds in your cupboard, or you can use a blend of your favorites. Here’s what you’ll need:

  • Whole wheat flour: Nutty and earthy, whole wheat flour is not only healthier but much more flavorful than white flour. You can use regular whole wheat flour or white whole wheat flour for a lighter taste.
  • All-purpose flour: Using some all-purpose flour makes the bread loftier, softer, and lightens the crumb. You can use 100% whole wheat, but the loaf will not rise as much.
  • Mixed seeds: Seeds add flavor, texture, extra protein, and a dose of healthy fats. I used a blend of flax, sunflower, and sesame sesame seeds.
  • Kosher salt: I use Diamond Crystal kosher salt. If you’re using Morton’s, sea salt or table salt, reduce the amount to 1 1/2 teaspoons.
  • Instant yeast: I like to use instant yeast because you don’t need to activate it before mixing the dough. You may substitute it with the same amount of active dry yeast, but you’ll need to extend the rising and proof times by 15 to 20 minutes.
  • Water: You can substitute some or all of the water for milk or plant-based milk for a richer loaf.
  • Olive oil: Olive oil tenderizes the dough and gives the loaf a softer crumb.
  • Honey: A little bit of honey adds a touch of floral sweetness to offset some of the bitter notes in the whole wheat. To make this vegan, substitute the honey with another liquid sweetener, such as maple, date, or agave syrup.
  • Egg wash: brushing the top of the loaf with an egg wash helps the mixed seed topping stick to the bread and creates a golden-brown crust. To make it vegan, use Just Egg (vegan egg replacement) thinned with some plant-based milk, or to use aquafaba.
An overhead photo of a partially sliced whole wheat bread loaf behind 3 slices of the bread on a cutting board with a knife.

How to Make Seeded Whole Wheat Bread

At one point I fell into a rhythm of baking bread on Sunday afternoons to use throughout the week. I’m not suggesting everyone has the time for this—I admit baking is both my job and my hobby. But it can be a treat to break the routine when you can, especially when the reward is freshly baked bread! Here are the steps:

Make and Rest the Dough

  • Toast the seeds: Preheat the oven to 350°F. Spread 1/2 cup of mixed seeds into a single layer on a baking sheet and toast in the preheated oven for 5 to 10 minutes, until fragrant and light brown. Start checking after 5 minutes so they don’t burn. Turn off the oven and set the seeds aside to cool slightly. The seeds for the whole wheat bread spread evenly on a baking sheet.
  • Mix the dry ingredients: Add the cooled seeds to a large mixing bowl, along with  2 3/4 cups (330g) whole wheat flour, 1 cup (120g) all-purpose flour, 1 tablespoon (9g) salt, and 1 tablespoon instant yeast. The dry ingredients for the whole wheat bread in a mixing bowl with a wooden spoon.
  • Add the wet ingredients: Pour in 1 1/4 cups (300ml) hot water (105 to 115°F), 2 tablespoons olive oil, and 1 tablespoon honey. Mix with a wooden spoon until the dough comes together into a rough ball.
  • Knead the dough: Scrape the dough onto a lightly floured surface. Knead by hand for 10 minutes until smooth. At first, the dough will seem too sticky, but it will become more manageable as you knead it. Try not to add much flour. If the dough sticks to your hands or the countertop, let it be and reincorporate it into the dough once the dough loses some of its stickiness.An overhead photo of a whole wheat bread dough ball.
  • First rise: Shape the dough into a taught ball. Grease a clean bowl with a thin layer of olive oil and place the ball of dough in the bowl. The whole wheat bread dough ball in a large bowl.
  • Rest the dough. Cover and leave it in a warm place to rise for about 1 hour, or until roughly doubled in size. Whole wheat dough rising in a large bowl.

Shape, Top, and Proof the Dough

  • Shape the dough: Grease a loaf pan with olive oil and set aside. Lightly dust a clean work surface with flour. Place the dough upside down on the surface so the smooth side is facing down. Gently press and stretch the dough to shape it into a square the same width as the bottom of the loaf pan.An overhead photo of whole wheat bread dough shaped into a large square next to a small bowl of flour and a loaf pan.
  • Roll the dough into a log and pinch the seam. Place the loaf in the greased pan with the seam side down.An overhead photo of whole wheat bread dough rolled into a cylinder shape next to a small bowl of flour.
  • Add the mixed seed topping: Make an egg wash by beating the egg and 1 tablespoon of water in a small bowl with a fork. Brush the top of the loaf lightly with the egg wash. Sprinkle the top with 1/4 cup of untoasted mixed seeds.An overhead photo of unbaked whole wheat bread in a loaf pan.
  • Proof: Cover the pan loosely. Leave it in a warm place to rise for 30 minutes to an hour. The dough should reach the rim of a 9×5-inch loaf pan or about 1-inch above the rim in an 8 1/4×4 1/2-inch pan. Meanwhile, preheat the oven to 350°F.An overhead photo of unbaked whole wheat bread in a loaf pan.

Bake, Cool, and Slice

  • Preheat the oven and bake: Bake the loaf in the hot oven until it’s golden brown, 50 to 60 minutes. If you have a digital thermometer, the loaf is done when the interior reaches 190°F.An overhead photo of baked whole wheat bread in a loaf pan.
  • Cool: Remove the loaf from the pan and set it on a rack to cool. As tempting as warm bread is, for the best texture, let it cool completely before slicing. An overhead photo of a loaf of whole wheat bread on a wire rack.

What Seeds to Use for Whole Wheat Bread

I typically use a blend of flax, sunflower, and white sesame seeds in my whole wheat bread recipe because of their flavor, and because I always keep them stocked for adding to my weekly batch of Granola

By switching what seeds you use, you can vary the flavor and texture of the loaf and adapt the recipe to what you keep stocked in your cupboard. You can try black sesame, pumpkin, chia, poppy, or hemp seeds. I toast the seeds that will be mixed into the dough, but I use untoasted seeds for topping the bread since they’ll toast while the bread bakes.

A close up photo of a partially sliced whole wheat bread loaf.

How to Knead Whole Wheat Dough

Kneading the dough develops the gluten, a network of proteins that activates when mixing flour and water. Gluten gives the dough structure and the ability to trap the gasses produced by the yeast for a well-risen, light loaf.

Lately, I’ve been kneading more doughs by hand, either on the countertop with doughs like this one or in the bowl using periodic folds for slacker doughs like Focaccia. I like to feel the dough transform from a sticky mess to a smooth, structured mass.

The dough is ready when it has lost its stickiness, though it may still feel tacky. The dough will stretch easily without tearing. It will look smooth, but not perfectly so because of the seeds and the bran from the whole wheat flour.

To knead by hand:

  • Turn the dough out onto a lightly floured surface. 
  • Push the dough with the heel of your palm, stretching the dough forward. 
  • Use your fingers to fold it back. 
  • Give the dough a quarter turn and continue.

To knead in a stand mixer:

  • Knead the dough on speed 2 in a KitchenAid fitted with a dough hook for 5 to 7 minutes, or until the dough no longer sticks to the sides of the bowl and gathers around the dough hook.
  • Note: There’s less mess and you avoid the dough sticking to your hand. The only downside is that it may crush some of the seeds, but you won’t notice it in the final loaf.
A close up of a loaf of whole wheat bread.

What to Serve with Seeded Whole Wheat Bread

This seeded whole wheat bread recipe is perfect for all kinds of sandwiches, open-faced sandwiches, and toast. While it’s fresh and soft, use it for this Chickpea Salad Sandwich or this Veggie Sandwich. After a few days, the bread will begin to stale—but don’t fret. Toasting it breathes new life.

Start the day with a hearty breakfast toast, like this Mediterranean-style Breakfast Toast or Egg Toast with Veggies. For a quick lunch or light dinner make this Vegetarian Smashed Chickpea Toast. Or, for an easy snack, spread on homemade Pistachio Butter and a drizzle of honey.

More Whole Wheat Treats

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4 from 1 vote

Seeded Whole Wheat Bread

photo of author mark beahm.Mark Beahm
A close up photo of a partially sliced whole wheat bread loaf behind 3 slices of the bread on a cutting board with a knife.
With its tender, fluffy center and perfectly crunchy yet delicate crust, this wholesome whole wheat loaf is well-worth the time it takes to make it!
Prep – 30 minutes
Cook – 1 hour 30 minutes
Cuisine:
American/Mediterranean
Serves – 8 slices (1 loaf)
Course:
Bread

Ingredients
  

For the Dough

  • 1/2 cup (70g) mixed seeds, such as flax, sunflower, and sesame
  • 2 3/4 cups (330g) whole wheat flour
  • 1 cup (120g) all purpose flour (see note)
  • 1 tablespoon (9g) kosher salt
  • 1 tablespoon instant yeast
  • 1 1/4 cups (300ml) hot water (105 to 115°F)
  • 2 tablespoons extra virgin olive oil, plus more for greasing
  • 1 tablespoon honey

For the Topping

  • 1 large egg
  • 1 tablespoon water
  • 1/4 cup (35g) mixed seeds, such as flax, sunflower, and sesame

Instructions
 

  • Toast the seeds: Preheat the oven to 350°F. Spread the 1/2 cup mixed seeds into a single layer on a baking sheet and toast in the preheated oven for 5 to 10 minutes, until fragrant and light brown. Start checking after 5 minutes so they don't burn. Turn off the oven and set the seeds aside to cool slightly.
  • Mix the dry ingredients: In a large mixing bowl, whisk together the whole wheat flour, all-purpose flour, toasted seeds (it's okay if they're still warm), salt, and yeast.
  • Add the wet ingredients: Pour in the water, olive oil, and honey. Mix with a wooden spoon until the dough comes together into a rough ball.
  • Knead the dough: Scrape the dough onto a lightly floured surface. Knead by hand for 10 minutes until smooth. At first, the dough will seem too sticky, but it will become more manageable as you knead it. Try not to add much flour. If the dough sticks to your hands or the countertop, let it be and reincorporate it into the dough once the dough loses some of its stickiness.
  • First rise: Shape the dough into a taught ball. Grease a clean bowl with a thin layer of olive oil and place the ball of dough in the bowl. Cover and leave it in a warm place to rise for about 1 hour, or until roughly doubled in size.
  • Shape the dough: Grease a loaf pan with olive oil and set aside. Lightly dust a clean work surface with flour. Place the dough upside down on the surface so the smooth side is facing down. Gently press and stretch the dough to shape it into a square the same width as the bottom of the loaf pan. Roll the dough into a log and pinch the seam. Place the loaf in the greased pan.
  • Add the mixed seed topping: Make an egg wash by beating an egg and 1 tablespoon of water in a small bowl with a fork. Brush the top of the loaf lightly with the egg wash. Sprinkle the top with 1/4 cup of untoasted mixed seeds.
  • Proof: Cover the pan loosely. Leave it in a warm place to rise for 30 minutes to an hour. The dough should reach the rim of a 9×5-inch loaf pan or about 1-inch above the rim in an 8 1/4×4 1/2-inch pan. Meanwhile, preheat the oven to 350°F.
  • Preheat the oven and bake: Bake the loaf in the hot oven until it’s golden brown, 50 to 60 minutes. If you have a digital thermometer, the loaf is done when the interior reaches 190°F.
  • Cool: Remove the loaf from the pan and set it on a rack to cool. As tempting as warm bread is, for the best texture, let it cool completely before slicing.

Notes

  • Shop this recipe: Visit our shop to browse quality Mediterranean ingredients including the olive oil and honey used in this recipe.
  • Storage: Store the bread in an airtight container, a bread box, a cloth bag, or a paper bag for up to 3 days.
  • To make it 100% whole wheat: Simply swap the all purpose flour for whole wheat flour, but keep in mind the loaf will not rise as much.
  • To make it vegan: 
    • Swap the egg: My top recommendations would be to use Just Egg (vegan egg replacement) thinned with a splash of plant-based milk, or to use aquafaba.
    • Swap the honey: With another liquid sweetener, such as maple, date, or agave syrup.
  • To knead in a stand mixer: Knead the dough with a dough hook on speed 2 for 5 to 7 minutes, or until the dough no longer sticks to the sides of the bowl and gathers around the dough hook.

Nutrition

Calories: 324.3kcalCarbohydrates: 45.1gProtein: 11gFat: 11.7gSaturated Fat: 1.7gPolyunsaturated Fat: 1gMonounsaturated Fat: 2.9gTrans Fat: 0.003gCholesterol: 20.5mgSodium: 881.5mgPotassium: 180.4mgFiber: 6.2gSugar: 2.6gVitamin A: 33.7IUVitamin C: 0.01mgCalcium: 20.4mgIron: 2.4mg
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Mark learned to bake professionally at Two Fat Cats Bakery in Portland, Maine and was most recently the head baker at Hjem Kensington, a Danish café in London. He lived in Barcelona and Madrid for six years, before moving to London and then back to the States. He is fascinated by the intersection of food, culture, and science. He has been developing recipes for home bakers for three years and began writing for The Mediterranean Dish in 2022.

When he’s not in the kitchen, he spends his time traveling, knitting, and learning to throw pottery.
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4 from 1 vote

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Comments

  1. Susie says:

    This is a question, not a comment: What size loaf pan do I need to use? (I have to try and find one in The Netherlands.)

    1. TMD Team says:

      Hi, Susie! Either a 9×5-inch loaf pan or an 8 1/4×4 1/2-inch pan will work here.

      1. Susie says:

        Thank you.

  2. Kimberly Johnson says:

    I tried this recipe twice – once with seeds – once without. My dough was very dry – not sticky at all – is there milk or something missing from the recipe?

    1. TMD Team says:

      Hi, Kimberly. Without being in your kitchen I can’t say for certain what’s happening, but it might be how you are measuring your flour. Try scooping into your measuring cup or using a kitchen scale. Did you actually move forward with baking the dough each time you attempted the recipe? If so, just curious if the finished product was also dry.

  3. beanie2670 says:

    4 stars
    Excellent bread. Very crunchy crust and the seeds are great.
    I might cut the salt to one teaspoon instead of a tablespoon.
    The flour mixture could also be more varied with less whole wheat and perhaps a cup of rye flour and use bread flour instead of all purpose flour. I’m going to add a tablespoon of molasses next time.
    I made the seed mixture up into a container. That way less waste.
    Nice recipe. It’s a keeper.

    1. TMD Team says:

      Thanks so much!

  4. Karen Christensen says:

    Do you think I could use the dough setting on my bread maker for this recipe for the kneading process?

    1. TMD Team says:

      Possibly, Karen. We don’t have any experience with bread makers though, so it’s hard to say for sure. If you decide to give it a try, please stop back and share your thoughts!

  5. Sonia says:

    If I wanted to substitute the whole wheat flour with whole wheat pastry flour, would I use the same amount of flour? Could it be done? Thank you.

    1. TMD Team says:

      Hi, Sonia! You could try it, but pastry flour has a lower protein content than regular whole wheat flour and, typically for yeasted breads, you want that extra protein because it can absorb more moisture and make the bread stronger giving it more structure and allowing it to reach a higher volume.

  6. Andrea says:

    Hi, looks perfect. I would like to try it but I am not sure the calories at the end of the recipe is for the hole bread? Not for one slice? Right? Thanks if you reply

    1. TMD Team says:

      Hi, Andrea. The nutritional information info listed here is per slice.

  7. chriti says:

    All purpose flour =The type of flour used in pastry?
    Wholewheat flour..is this bread flour or the flour generally used for bread making, or general, all.purpose? Wholewheat flour.
    Thankyou

    1. TMD Team says:

      Hello! You can click here for an example of all purpose flour, and here for an example of whole wheat flour. Hope that helps a bit!